Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs13050727 chr21:44076869 C/T 0.000107 116 41.77 41.05 28.43 KM Plot
THYM rs13055172 chr22:23926250 C/T 1.52E-6 115 49.5 27.1 22.17 KM Plot
THYM rs13058817 chr3:53024139 C/T 0.000205 118 42.73 23.8 25.63 KM Plot
THYM rs13068385 chr3:193295 C/T 1.0E-12 117 42.9 27.1 6 KM Plot
THYM rs13069006 chr3:52973305 G/C 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs13072395 chr3:52980573 T/C 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs13074524 chr3:52974184 A/G 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs13078834 chr3:52984770 G/T 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs13082310 chr3:193302 T/G 1.29E-12 116 44.38 27.1 6 KM Plot
THYM rs13089969 chr3:52918267 T/G 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs13091844 chr3:53010271 C/T 0.000283 117 42.9 23.75 25.63 KM Plot
THYM rs13092352 chr3:52969697 C/T 0.000223 119 42.9 23.75 25.63 KM Plot
THYM rs13094156 chr3:193162 G/A 1.0E-12 117 42.9 27.1 6 KM Plot
THYM rs13101355 chr4:6293446 T/C 1.25E-6 119 25.83 38.58 50.13 KM Plot
THYM rs13103357 chr4:6294544 A/G 1.43E-6 118 25.83 38.58 50.1 KM Plot